You start Wine in a term with a program name, like such
wine setup.exe &
That will run the setup.exe prm from the CD (assuming you have cd to the hdc.
After insalling the pgm, to execute it
wine myprogram.exe &
The program will start up in a new window (assiuming you have cd to /.wine/Program\ Files\/Mypgmfolder/
Flash? For the IE6? Start IE like above ,
wine ie6.exe &
The load flash over http.
Go to www.winehq.org
and look up stuff for running and installing.