For a dual boot environment, you have to follow these steps (some of them you may have done already).
1. install windows first.
2. Use a partitioning tool to make sure there's as much empty, unpartitioned space on your hard drive as you want to use for Fedora.
3. Install Fedora, tell it to use the unpartitioned space during installation, and do automatic partitioning.
4. Fedora should detect your windows installation and have it in the boot loader, GRUB, as "Other" or "Dos".
To answer your real question, yes, you can make a boot floppy for Fedora Core using the mkbootdisk command as root. Here's an example that will make a boot disk to boot the latest kernel.
Code:
mkbootdisk `(rpm -q --queryformat="%{version}-%{release}\n" kernel | tail -n 1)` --device /dev/fd0
(the `(rpm -q --queryformat="%{version}-%{release}\n" kernel | tail -n 1)` is just a fancy way to get the version of the most recent kernel you have installed)