All the applications that I have that minimize to system tray (deluge, gnote) show the system tray icon as the messenger icon that empathy uses. This is in Fedora 15 and Gnome-Shell 3.02. The status messages that I get from other programs show up correctly, its just on programs that minimize to the tray. This is not icon theme specific, as I have tried several others including the default. I tried disabling all the shell extensions that I installed, and that didn't fix it either.
Anyone else had this happen to them?
Edit: Any now for some reason they are all displayed as the gnote icon after I reloaded the shell.