Hi Sideways,
Yes, the file is being seen as raw, is that my problem? Google fails me on this 
Code:
# qemu-img info /home/<user>/vmware/Win2K/Win2K-000001.vmdk
image: /home/<user>/vmware/Win2K/Win2K-000001.vmdk
file format: raw
virtual size: 0 (0 bytes)
disk size: 4.0K
I've tried;
Code:
qemu-img convert -f vmdk /home/<user>/vmware/Win2K/Win2K-000001.vmdk -O qcow2 /home/<user>/Win2K.qcow2
qemu-img: Could not open '/home/<user>/vmware/Win2K/Win2K-000001.vmdk'
The host system is F11 with ext4 and the image "should" be NTFS.
Hi beaker, I have so many scars and wounds from SElinux its always disabled on my systems 
You said
If you have multiple files (-1.vmdk, -2.vmdk) then try converting into a single file firt. i.e., MyMachine.vmdk.
How did you do that? The file list from the directory is;
Code:
vmware-0.log
vmware-1.log
vmware-2.log
vmware.log
Win2K-000001-s001.vmdk
Win2K-000001-s002.vmdk
Win2K-000001-s003.vmdk
Win2K-000001-s004.vmdk
Win2K-000001-s005.vmdk
Win2K-000001.vmdk
Win2K.nvram
Win2K-s001.vmdk
Win2K-s002.vmdk
Win2K-s003.vmdk
Win2K-s004.vmdk
Win2K-s005.vmdk
Win2K-Snapshot1.vmem
Win2K-Snapshot1.vmsn
Win2K.vmdk
Win2K.vmsd
Win2K.vmx
Win2K.vmxf
Am I missing a step here?
I looked at the vmware.log, and it says the vmware was version=6.5.0. These vmware images have been migrated from every release of Fedora since FC6! and I would really like to avoid vmware and move to kvm, but my window of opportunity is running out.
Thank you beaker and sideways for all your help, I really appreciate it guys!